Package: EpiSODIC
Type: Package
Title: Epidemiological Signal Observation, Detection, Identification,
        and Classification
Version: 0.24.0
Authors@R: c(
    person(given = c("Matthijs", "S."),
           family = "Berends",
           role = c("aut", "cre"),
           email = "m.berends@certe.nl"),
    person(given = "Certe Medical Diagnostics & Advice Foundation",
           role = c("cph", "fnd"),
           comment = c(ROR = "04m8g8w48")),
    person(given = "University Medical Center Groningen",
           role = c("cph", "fnd"),
           comment = c(ROR = "03cv38k47")))
Description: An automated surveillance system for infectious disease
        epidemiologists that detects aberrations in
        laboratory-confirmed infections, records epidemiologist's
        formal assessment with a full audit trail, and produces
        outbreak reports for clinical colleagues and infection
        prevention nurses. Applies evidence-based statistical methods
        such as Improved Farrington (2013) <doi:10.1002/sim.5595> and
        'EpiEstim' (Cori et al. 2013) <doi:10.1093/aje/kwt133>. Ships
        with a synthetic demo data set requiring no external data or
        infrastructure.
License: GPL-2
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.1.0)
Imports: AMR (>= 3.0.0), DBI, digest, ggplot2 (>= 3.5.0), mem, rlang,
        RSQLite, shiny (>= 1.14.0), sodium, surveillance, yaml
Suggests: AzureAuth, AzureGraph, bslib, cli, commonmark, curl,
        EpiEstim, htmltools, httr2, jsonlite, knitr, Microsoft365R,
        pkgdown, quarto, RMariaDB, rmarkdown, sf, testthat (>= 3.0.0),
        withr, zip
Config/testthat/edition: 3
VignetteBuilder: knitr
URL: https://certe-medical-epidemiology.github.io/EpiSODIC,
        https://github.com/certe-medical-epidemiology/EpiSODIC
BugReports: https://github.com/certe-medical-epidemiology/EpiSODIC/issues
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: cmake make libicu-dev libsodium-dev libuv1-dev
        zlib1g-dev
Repository: https://certe-medical-epidemiology.r-universe.dev
Date/Publication: 2026-09-30 10:40:58 UTC
RemoteUrl: https://github.com/certe-medical-epidemiology/EpiSODIC
RemoteRef: HEAD
RemoteSha: 13d45390ccaf2352fea7e649d4577db13b54ce34
NeedsCompilation: no
Packaged: 2026-09-30 14:12:08 UTC; root
Author: Matthijs S. Berends [aut, cre],
  Certe Medical Diagnostics & Advice Foundation [cph, fnd] (ROR:
    <https://ror.org/04m8g8w48>),
  University Medical Center Groningen [cph, fnd] (ROR:
    <https://ror.org/03cv38k47>)
Maintainer: Matthijs S. Berends <m.berends@certe.nl>